{ "_id": "6a1efabdb401979e73418840", "Package": "BIGr", "Title": "Breeding Insight Genomics Functions for Polyploid and Diploid\nSpecies", "Version": "0.7.2", "Authors@R": "c(person(given='Alexander M.',\nfamily='Sandercock',\nemail='sandercock.alex@gmail.com',\nrole=c('cre','aut')),\nperson(given='Cristiane',\nfamily='Taniguti',\nrole = 'aut'),\nperson(given='Josue',\nfamily='Chinchilla-Vargas',\nrole='aut'),\nperson(given='Shufen',\nfamily='Chen',\nrole='ctb'),\nperson(given='Manoj',\nfamily='Sapkota',\nrole='ctb'),\nperson(given='Meng',\nfamily='Lin',\nrole='ctb'),\nperson(given='Dongyan',\nfamily='Zhao',\nrole='ctb'),\nperson('University', \"of Florida\",\nrole=c('cph'),\ncomment = \"Breeding Insight\"))", "Maintainer": "Alexander M. Sandercock ", "Description": "Functions developed within Breeding Insight to analyze\ndiploid and polyploid breeding and genetic data. 'BIGr'\nprovides the ability to filter variant call format (VCF) files,\nextract single nucleotide polymorphisms (SNPs) from diversity\narrays technology missing allele discovery count (DArT MADC)\nfiles, and manipulate genotype data for both diploid and\npolyploid species. It also serves as the core dependency for\nthe 'BIGapp' 'Shiny' app, which provides a user-friendly\ninterface for performing routine genotype analysis tasks such\nas dosage calling, filtering, principal component analysis\n(PCA), genome-wide association studies (GWAS), and genomic\nprediction. For more details about the included 'breedTools'\nfunctions, see Funkhouser et al. (2017)\n, and the 'updog' output format, see\nGerard et al. (2018) .", "License": "Apache License (>= 2)", "URL": "https://github.com/Breeding-Insight/BIGr", "BugReports": "https://github.com/Breeding-Insight/BIGr/issues", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "biocViews": "", "RdMacros": "Rdpack", "Config/pak/sysreqs": "libbz2-dev libicu-dev liblzma-dev libx11-dev\nxz-utils zlib1g-dev", "Repository": "https://breeding-insight.r-universe.dev", "Date/Publication": "2026-05-18 12:03:32 UTC", "RemoteUrl": "https://github.com/breeding-insight/bigr", "RemoteRef": "HEAD", "RemoteSha": "12798c2f6dc9da58e41a783f7f01fba1d85989ad", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-18 13:06:29 UTC", "User": "root" }, "Author": "Alexander M. Sandercock [cre, aut],\nCristiane Taniguti [aut],\nJosue Chinchilla-Vargas [aut],\nShufen Chen [ctb],\nManoj Sapkota [ctb],\nMeng Lin [ctb],\nDongyan Zhao [ctb],\nUniversity of Florida [cph] (Breeding Insight)", "MD5sum": "3056d9d3ad6baf1429f316b1cb4997e3", "_user": "breeding-insight", "_type": "src", "_file": "BIGr_0.7.2.tar.gz", "_fileid": "be6f552a2e1954a60683e00970213bfba714ba91780fd9e6445a22a3207d9ec7", "_filesize": 1624510, "_sha256": "be6f552a2e1954a60683e00970213bfba714ba91780fd9e6445a22a3207d9ec7", "_created": "2026-05-18T13:06:29.000Z", "_published": "2026-06-02T15:46:05.545Z", "_distro": "noble", "_jobs": [ { "job": 79111590909, "time": 346, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7058725873" }, { "job": 79111590762, "time": 358, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7058729953" }, { "job": 79111590901, "time": 206, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7058672335" }, { "job": 79111590555, "time": 211, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7058673750" }, { "job": 79111589268, "time": 308, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7058591013" }, { "job": 79111589280, "time": 192, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7362709999" }, { "job": 79111590564, "time": 335, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7058720916" }, { "job": 79111590657, "time": 291, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7058704928" }, { "job": 79111590300, "time": 314, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7058713266" } ], "_buildurl": "https://github.com/r-universe/breeding-insight/actions/runs/26035155474", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/breeding-insight/bigr", "_commit": { "id": "12798c2f6dc9da58e41a783f7f01fba1d85989ad", "author": "Alexander Sandercock <39815775+alex-sandercock@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #61 from Breeding-Insight/development\n\nCRAN 7.2 submission", "time": 1779105812 }, "_maintainer": { "name": "Alexander M. Sandercock", "email": "sandercock.alex@gmail.com", "login": "alex-sandercock", "twitter": "@sandercock_alex", "description": "Genomics Coordinator @Breeding-Insight ", "uuid": 39815775 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.4.0", "role": "Depends" }, { "package": "parallel", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "Rdpack", "version": ">= 0.7", "role": "Imports" }, { "package": "readr", "version": ">= 2.1.5", "role": "Imports" }, { "package": "reshape2", "version": ">= 1.4.4", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "tidyr", "version": ">= 1.3.1", "role": "Imports" }, { "package": "vcfR", "version": ">= 1.15.0", "role": "Imports" }, { "package": "Rsamtools", "role": "Imports" }, { "package": "Biostrings", "role": "Imports" }, { "package": "pwalign", "role": "Imports" }, { "package": "janitor", "role": "Imports" }, { "package": "quadprog", "role": "Imports" }, { "package": 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