Package: deltabreedquery 1.0.4
deltabreedquery: Fast, Simple API Tools for Retrieving Data from 'DeltaBreed'
Simplified data retrieval from the 'DeltaBreed' breeding data management platform (<https://sandbox.breedinginsight.net/>) via the 'BrAPI' open-source breeding data API (<https://brapi.org/specification>). Each of the four main data types stored in 'DeltaBreed' (germplasm, trait variables, experiments/environments, and observations) are handled by a get_datatype() function that constructs and executes the request, handles paginated responses, and parses the retrieved data. Responses are reformatted into a consistent, R-friendly data frame format that resembles how the data appears on the 'DeltaBreed' web interface as closely as possible.
Authors:
deltabreedquery_1.0.4.tar.gz
deltabreedquery_1.0.4.zip(r-4.7-any)deltabreedquery_1.0.4.zip(r-4.6-any)deltabreedquery_1.0.4.zip(r-4.5-any)
deltabreedquery_1.0.4.tgz(r-4.6-any)deltabreedquery_1.0.4.tgz(r-4.5-any)
deltabreedquery_1.0.4.tar.gz(r-4.7-any)deltabreedquery_1.0.4.tar.gz(r-4.6-any)
deltabreedquery_1.0.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
deltabreedquery/json (API)
| # Install 'deltabreedquery' in R: |
| install.packages('deltabreedquery', repos = c('https://breeding-insight.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/breeding-insight/deltabreedquery/issues
Last updated from:5b2bd072ea. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 137 | ||
| source / vignettes | OK | 207 | ||
| linux-release | OK | 131 | ||
| macos-release | OK | 87 | ||
| macos-oldrel | OK | 104 | ||
| windows-devel | OK | 79 | ||
| windows-release | OK | 84 | ||
| windows-oldrel | OK | 104 | ||
| wasm-release | OK | 107 |
Exports:check_authfilter_observationsget_experimentsget_germplasmget_observationsget_variableslogin_deltabreedlogout_deltabreed
Dependencies:askpassclicpp11curldplyrgenericsgluehttr2jsonlitelifecyclemagrittropensslpillarpkgconfigpurrrR6rlangstringistringrsystibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Validate BrAPI authentication credentials | check_auth |
| Retrieve a filtered list of observation data | filter_observations |
| Retrieve experiment/ summary | get_experiments |
| Retrieve germplasm records | get_germplasm |
| Retrieve all observation data | get_observations |
| Retrieve observation variables (trait definitions) from a DeltaBreed instance. | get_variables |
| Log in to a DeltaBreed instance | login_deltabreed |
| Clear DeltaBreed authentication credentials | logout_deltabreed |
